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Biology Checklist ☑

Shikimate pathway + Glucose


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Abstract Biology

Taking some of the simpler biology as I use it in world building

The Voice has been given the command “Think structure” and, as it is programmed to do, it will give a surface-level judgment

Map:

First Nucloendo, the old universe → Characters → Synapse Last Nucloendo, Lamina

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Nucloendo

Transitioning Into Lamina

The Universe Gets Synapsed

(Glucose + Nitrogenous bases (A, U, G, C))

Glucose → 2 Pyruvate → Acetyl-CoA → Citric Acid Cycle → CO₂ + H₂O + ATP

Adenine (A) → Hypoxanthine → Xanthine → Uric acid

Guanine (G) → Xanthine → Uric acid

Cytosine (C) → Uracil → β-Alanine + NH₃ + CO₂

Uracil (U) → β-Alanine + NH₃ + CO₂

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(Glucose-6-phosphate + Ribose sugar)

Glucose-6-phosphate → Fructose-6-phosphate → Fructose-1,6-bisphosphate → Glyceraldehyde-3-phosphate → Pyruvate → Acetyl-CoA → Citric Acid Cycle → CO₂ + H₂O + ATP

Ribose → Ribose-5-phosphate → Xylulose-5-phosphate / Glyceraldehyde-3-phosphate → Glycolysis intermediates → Pyruvate → Acetyl-CoA → Citric Acid Cycle → CO₂ + H₂O + ATP

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(3-Phosphoglycerate + Phosphate groups)

3-Phosphoglycerate → 2-Phosphoglycerate → Phosphoenolpyruvate (PEP) → Pyruvate → Acetyl-CoA → Citric Acid Cycle → CO₂ + H₂O + ATP

Phosphate groups cannot be degraded

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(Ribose-5-phosphate + Nucleotides)

Ribose-5-phosphate → Ribulose-5-phosphate → Xylulose-5-phosphate / Sedoheptulose-7-phosphate → Glyceraldehyde-3-phosphate + Fructose-6-phosphate → Pyruvate → Acetyl-CoA → Citric Acid Cycle → CO₂ + H₂O + ATP

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(Pyruvate + dATP)

Pyruvate → Acetyl-CoA → Citric Acid Cycle → CO₂ + H₂O + ATP

dATP → dADP + Pi + energy → dAMP + Pi + energy → Adenine + Deoxyribose + Pi

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(Acetyl-CoA + dTTP)

Acetyl-CoA → Citrate → Isocitrate → α-Ketoglutarate → Succinyl-CoA → Succinate → Fumarate → Malate → Oxaloacetate → CO₂ + H₂O + ATP

dTTP → dTDP + Pi + energy → dTMP + Pi + energy → Thymine + Deoxyribose + Pi

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24 Feb 2026

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(Characters)

Panthra (Tiger - MC1R)

A 7-transmembrane receptor protein

Embedded in the plasma membrane of melanocytes

Structural Components:

Extracellular N-terminal domain

Seven transmembrane α-helices (TM1–TM7)

Three extracellular loops

Three intracellular loops

Intracellular C-terminal tail

MC1R is activated by α-MSH (alpha-melanocyte-stimulating hormone), which is derived from the precursor protein POMC

When α-MSH binds:

MC1R changes shape (conformational shift).

It activates a Gs protein inside the cell.

Gs activates adenylate cyclase.

Adenylate cyclase increases cAMP levels.

cAMP activates protein kinase A (PKA)

PKA stimulates MITF (microphthalmia-associated transcription factor).

MITF activates genes involved in melanin synthesis.

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Nuclumito

Communication Between Universes

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(Glucose)

Nucloendo:

Three felines, three canines and one Voice as the anchor in the sea. A beam of energy comes down and introduced to the waves. A nature of two as they are to never fully agree, for the sake of individuality. But, events were never meant to stay linear. Time becomes a loop, the ends meet. There is a mission to complete and that is to connect the ends of time as it flows in one direction and then the other.

Before the days of the flesh, energy bodies wait for a world carved from stone and flooded with the new sea.

This is the beginning of all worlds, a process of energy, meets stone and water.

Energy passes from one body to another like a non physical currency. The Voice’s thought process will meet a Lyrian and a Sirian point of view. And the two of them will create two small bodies of energy. One a provider and the other a carrier. 

Introduced to the experience of loss in one plane and then sorted by their light. What was the foundation in the old universe is not needed in Lamina. Growing new moral priorities.

There is also a state of existence to be experienced between the two universes. This state is called Lambda. As Lamina thinks, the Lyrians and Sirians speak into creation what lies in between.

Tethered in chains between worlds under a tree

(Nitrogenous bases (A, U, G, C))

The roots of knowledge bring together the instructions for creating portals. These portals two shapes one single, information travels one way. And double, information moves into one ring and exits the other. 

There is, between the characters 4 arguments and ideas for the building blocks, as they are resolved the information becomes structure stacked on top of one another.

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